Dear Joshua,
A new post on the topic "UX problem with close button" by Tyler Durden:
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Sorry Joshua... I accidentally deleted your comments. I would completely uninstall Inkscape and reinstall. That usually fixes this issue.
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Link: http://www.inkscape.org/forums/questions/ux-problem-with-close-button/#c60544
All the best,
Inkscape.org Website
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